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BOT 111: BOTANICAL COLLECTION

COLLECTION AND IDENTIFICATION OF PLANTS

Reference:      Handbook of field and herbarium methods by Jain S. K. and Rao, R. R.

Plant collections generally consist of samples of plants that are preserved by drying or by means of liquid preservation. They may also include live plants or propagules taken from the wild and grown in artificial environment.

Botanical collection refers to any process of gathering plants from the field for various purposes. The nature of the collection varies with purpose. Plant collections serve several purposes:

  1. They are used for building up a new herbaria or for enriching the already existing one (old herbaria)
  2. Plants are collected for class work/teaching or for donating to other institutions.
  3. For introduction of live material in gardens or for breeding studies.
  4. Collecting large quantities of a particular plant for crude drug for trade
  5. For ethnobotanical studies (study of relationship of plants with local inhabitats of an area, noting their uses, taboos e.t.c.)
  6. For sale or trade.
  7. For research work or analysis
  8. Used in studies of floristic diversity –writing up flora of a given area.
  9. They serve as reference material for named taxa. Such reference materials are termed as voucher specimens. Most are dried specimens and they are selected from the original plant collection (type specimen)
  10. Voucher specimens may serve as reference in verifying the identity of a plant taxon.

Kinds of field work

This depends on the purpose of plant collection but can broadly be:

(a)        Collection trip- covers a small nearby area and lasts for a day or few days. The purpose is for detailed study of the vegetation or flora of the area.
(b)        Exploration- lasts for 4-6 weeks and covers a bigger area such as a district; for detailed floristic studies and building up herbaria and to study plants of economic importance. It requires a lot of planning and preparation.
(c)        Expendition- lasts for several months and covers a bigger area. It takes place in remote places which may be difficult to reach and involves a lot of preparation; generally done in groups involving several institutions or organizations; costs a lot of money; area may usually yield  new species; needs a lot of coordination in terms of funding, communication, supplies, publicity, leadership , allocation of duties and safety. 

Preparation
This calls for prior arrangements depending on purpose, duration, size of the party and the area they are visiting. However you need to:
(a)    Study the area before the trip – use literature, published pamphlets (floras), maps. If collections are in protected areas e.g. national parks, request for permission to collect plants should be made prior to the visit of such areas.
(b)   Make arrangement of journey and where to stay – communicate with the relevant authorities for accommodation reservation, especially in remote areas. Plan to stay in affordable and decent places e.g. guest houses, hostels, campsites, hotels etc. Such places should have adequate space fro sorting out plants collected during the day and press them.
(c)    Equipment/materials – These are the things you will need in the field. Some of the general equipments required include the following:
(i)                 Vasculum – this is a metal or aluminium tin with a tight lid for keeping plants immediately after collection and is painted white to deflect heat. In the absence of this polythene bags of different sizes can be used.
(ii)               Field/plant press – This is a device by means of which fresh specimens are pressed and quickly dried. It is made up of two simple hard boards or thin plywood or from wires measuring 30x42cm and tied using a leather or cotton straps. In between are placed a number of driers or blotting papers containing plant specimens.
(iii)             Field books – these are special books that are used for labelling plants as well as recording notes about plants in the field. Many herbaria and professional collectors have form-style collecting books with printed serial numbers. Carbon copies of field notes are made on perforated pages. These pages are torn out and placed with specimens when they are pressed. The original is retained in the notebook and kept for records. In their absence, ordinary exercise books can be used.
(iv)             Blotting paper/absorbent papers/newspapers – these are used for pressing and drying specimens. One needs to carry a lot of them if staying for long in the field. Valuable data such as collection no’s, dates or any other information should never be written on these papers as they are frequently changed. It is always preferable to have labels stuck on plants instead.
(v)               Specimen jars/tubes/bottles – these should be assorted sizes and filled with fixatives (e.g. FAA for preserving plant tissues; carnoys fixative for cytological material such as flower buds, root tips and 70% ethanol for morphological studies. For DNA studies silica gel used for preserving plant materials. The specimen bottles/jars must be clearly labelled with the species name and collector number.
(vi)             Shoulder bags/backpacks – these are made of canvas or some waterproof material. They are used for keeping items such as cameras, binoculars, secateurs, notebooks, water bottles, GPS etc.
(vii)           Secateurs – or clippers for cutting small twigs from trees and shrubs fro the herbarium.
(viii)         Pruning shears – for cutting twigs from tall trees
(ix)             Pick or small shovel – for uprooting herbaceous or bulbous plants for the purpose of identification. To avoid loss of equipment in the field, one should paint the equipment’s handle a bright colour.
(x)               Global positioning system (GPS) – for collecting field data such as longitude, latitude, altitude etc.
(xi)             Magnifying lens – preferably x10 magnification.
(xii)           Pens & pencils, Photographic equipment (digital camera), First aid kits 9with medicines for insect bites, snake bites etc), field shoes, utensils, food stuff, match box etc.

What to collect
Depending on the purpose of collection, all collections should be exhaustive and samples of all plants should be collected. Materials collected should be good, properly labelled, well pressed and presentable. What one collects depends on the purpose of the study. A collection should comprise of good specimens which:

(a)                Contain flowers or fruits or both and should be clearly displayed on the pressing sheet without unnecessary folding or hiding of parts. Sterile specimens should be avoided.
(b)               In case of small plants like grasses, sedges and other herbs, whole plants including underground parts should be included.
(c)                Flowers, fruits and twigs should be taken from the same plant.
(d)               Try to collect flowers of both sexes even if they are on different plants
(e)                All groups of plants must be taken to make collections complete and representative including mosses, ferns and lichens.
(f)                Collect a good material which is free from disease and deformity
(g)               Collect several plants of the same type/species. The number collected should be at least six to facilitate distributions and exchange.  

Factors to consider when collecting plants
(a)    Be able to recognize sensitive species i.e. those that are rare, threatened or endangered. Most of these are protected by law and may not be harvested without permits.
(b)   Any collecting should not endanger the local population. Apply ‘1 to 20’ rule: for every one plant sample you collect, there should be at least 20 more present in the surrounding population.
(c)    Size of plant specimen- The card (mounting sheet) on which plants are mounted is 28 x 42 cm in size and your plant should fit in it. It the plant is bigger than this then fold it into V, N, M or Z shapes. For small herbs whole plants are collected and for large plants, part of the plant are cut and labelled A, B, C, D etc.

Documentation of plant collections or Field notes

Certain data must be recorded at the time of collecting a plant. The information is recorded in the field notebook and it is eventually typed onto the herbarium label. The data includes the following:
1.         Flora of: give country, province, district etc.
2.         Vernacular/local name: should be obtained from reliable sources to avoid exaggerated names and the language should be included.
3.         Locality: name of place, the approximate distance and direction from a permanent place. This should be as detailed as possible, including the name of roads, lakes and so on in the vicinity, as well as Township and District. The latitude and longitude  or the UTM Grid Reference and Map Number will be needed fro the herbarium label, but can be added later if they are not known. One can also use the Global Positioning System (GPS) as it helps one to quickly get the latitude, longitude, altitude and other data much faster.
4.         Habitat: this refers to the condition under which a plant is growing e.g. marshland (swamp), moorland, thicket, forest, rock crevices etc. This should include the general habitat as well as more specific details of micro-habitat. Important points are type of soil or other substrate (sand. Clay, granite, dead wood, other vegetation), associated species, moisture and aspect (fully exposed on a south facing bank; under dense scrub etc).
 5.        Description of the plant: this should be brief; visible variations that are not obvious on the herbarium specimen. State the height; annual or perennial; erect or prostrate; herb, shrub or tree; type of bark; obvious smell; whether plant is clomped, single or growing in patches and the presence of creeping or underground stems; flower and fruit colour; pubescence; latex etc.
6.         Economics or uses: note whether any part of the plant is edible or poisonous; whether the parts of the plant are useful e.g. in making timber, medicinal etc.
7.         Frequency: is plant common or rare
8.         Collector’s name: should be written in full
9.         Collector’s number:   should consist of numerical series from number one and continuing in that sequence. Each specimen should have its own number written on a label and attached to it.
10.       Date of collection: give the date, month and year to avoid confusion.

After all this information is recorded, the collected specimens are pressed and taken to the herbarium fro identification and documentation. 

Pressing and Drying of the Specimen

Plant pressing – is the process of drying plants in a plant press between absorbent papers. The purpose is to flatten and dry the specimens. Usually:
i)                    Collect a good material which is free from diseases, deformity etc.
ii)                  Place one plant per folder of drying paper.
iii)                Fold herbaceous plants which are longer than 30 cm (M, N, Z).
iv)                Prune to avoid overlapping parts.
v)                  Press with some leaves facing up and others down. This is good especially for ferns. For bulbs and other bulky plants, press after removing extra tissue.
vi)                If seeds and fruits are collected they should be mature and they should be dried and kept in a pocket.
vii)              For large plants, photograph, make sketches and collect seeds, flowers, branches etc.

The Plant Press
The plant press is designed so that plants can be dried quickly while being pressed flat. It consists of two cross-slatted wooden frames about the size of a folded newspaper (30 x 42cm). Plant specimens are laid in folded newspaper between layers of blotter sheets or foam and corrugated cardboard. The newspaper provides a folder for the plant. The paper, blotter and foam draw the moisture away from the specimen. Blotters can be thick blotting paper or thin sheets of the polyurethanefoam that is laid down under carpets. Foam is best for woody species or plants with large fruits, because the foam adjusts to the contours of the thickest parts of the specimen while at the same time ensuring that the leaves are well pressed. The cardboard allows air circulation within the press to speed up the drying process, and helps keep the specimens flat. Plants in their newspaper folders are piled in layers of alternating blotter and cardboard on one of the wooden frames (i.e. cardboard – blotter – folded newspaper with plant inside – blotter – cardboard – blotter – etc). When lying of the specimens is complete, the second frame is laid on top of the pile which is compressed and strapped as tightly as possible. The press is then placed to dry in warm, dry, circulating air. After 24 hours the paper and blotters should be changed to enhance the drying process. After this, the specimens may be left undisturbed for several weeks or months until they are completely dry and the press can be emptied. The straps have to be tightened periodically as the plant material shrinks.

Procedure for Pressing Plants

When preparing plants for pressing ensure that the dried specimen should fit neatly onto a standard herbarium sheet (420 x 297 mm; and as many features as possible should be visible on the mounted specimen. The following steps should be followed to help produce attractive and worthwhile mounted material:
  1. If a specimen is too long (longer than 30cm) to fit in the press or on the herbarium sheet, make a zig-zag bend in the stem or fold them in form of N, M, W, Z. This shortens the length of the specimen without any of the material being lost.
  2. Many leaves on a herbarium sheet look untidy and obscure detail. Snip off some of the leaves but always leave part of the petiole so that it is evident that leaves have been removed.
  3. The specimen should be laid out so that there is little or no overlap between parts.
  4. When stems are very thick they can be sliced lengthwise so that they are less bulky.
  5. If there are several flowers on a specimen, some should always be pressed open and flat so that the inside is displayed.
  6. Loose seeds and fruit can be placed in a small paper packet and pressed with the specimen. Later this packet will be glued to the herbarium sheet.


Mounting of the Specimen
Once the material is pressed, thoroughly dried, and poisoned, it is mounted on herbarium sheets. Poisoning can be done with mercuric chloride or formalin. Sometimes plants are fumigated using paradichlorobenzene. The standard size of the herbarium sheets is 420 x 297 mm. They should be made from stiff, acid-free paper or cardboard of good quality so that they do not turn yellow or crack with age. Space should be left in the lower right hand corner of the sheet for the herbarium label. When the arrangement is satisfactory, the specimen may be stuck to the sheet. Elmers glue or wood glue is often used to fix the plant on the herbarium sheet in such a way that all parts of the plant are visible. Usually one specimen is mounted per sheet of paper.  A herbarium label (8 x 10cm) is then glued on the bottom right hand of the sheet with all the information from the field note book e.g.

Flora of:
Name: Scientific
            Vernacular
Locality:
Habitat:
Collectors Name:
Collectors Number
Date of Collection:

 After mounting and labelling of specimens, the next step involves identification.

Plant Identification
Is the process through which an unknown plant is determined as being identical or similar to another already known plant. In this process the correct name of the plant is determined. Identification of plants is accomplished by use of different methods. The three major ones include the following:

(a)   Use of Herbaria (Specimen Comparison)
A herbarium is a collection of plant specimens that have been dried, identified and arranged systematically and they are available for reference or other scientific study. In this method an unknown plant is compared to an already correctly named herbarium specimen or a living collection. This method is only useful if we have a rough idea about the unknown plant such as family or genus thus narrowing down on the possibilities of identifying the taxon.

(b)   Use of Taxonomic Literature 
These are written accounts which include floras, checklists, taxonomic revisions etc which contain keys and descriptions of plants growing in a given geographical region. Features of the unknown plant are compared with written descriptions of the possible known taxa. This is a good method of determining with certainty whether the range of variation of the unknown plant corresponds to that listed in the description of a known plant.

(c)    Use of Taxonomic Keys (Botanical Keys)
A taxonomic key is a device or method used to determine the identity of an unknown plant when the comparative methods have failed. A key is useful only if we have a rough idea of what the unknown plant is e.g. the family or the genus.The user of the key is presented with a sequence of choices, usually between two statements until she/he arrives at the name of the unknown plant. The statements in the choices are based on the characteristics of the unsown plant. If the plant is a flowering one, the vegetative or flowering parts or both are used in identification e.g. flowers, fruits, seeds, stems, leaves, roots etc. Keys that are dichotomous (forked keys) with only two contrasting characteristics or statements are preferred to those that offer several equal statements to choose from.

A pair of contrasting statements in a key is called a couplet. Each statement in a couplet is termed as a lead. The main type of key is the forked or branching or dichotomous keys. It is of two kinds: the indented and the bracketed or numbered keys.
Indented keys are those where the contrasting statements or couplets are printed with gradually increasing indenting.




Indented key layout:
1 --------------
            2 ------------------
                  3 ------------------
                        3 ------------------
            2 ----------------    
1 --------------

Example

1. Fruit a group of akenes; flower not spurred
            2. Petals none
                        3. Sepals usually 4; involucre none ------------------------- Clematis
                        3. Sepals usually 5; involucre present ---------------------- Anemone
            2. Petals present -------------------------------------------------------- Ranunculus
1. Fruit a group of follicles; Flowers spurred
            4. Flowers regular; spurs 5 ------------------------------------------- Aquilegia
            4. Flowers irregular; spur 1 ------------------------------------------ Delphinum
The first choice is between “Fruit a group of akenes; flowers not spurred” and “Fruit a group of follicles; flowers spurred”. These paired statements are given the same indention and the same number. If the latter choice is taken, the next choice, as shown by indention and the number is between “Flowers regular; spurs 5” and “Flowers irregular; spur 1”. Therefore if the plant in question has follicles and irregular flowers with a single spur, it must be Delphinium.

Bracketed keys are keys where the two contrasting/alternative statements or couplets are written in adjacent lines giving reference by numbers of their successive subordinate clue or couplet.

1.         Fruit a group of akenes; Flowers not spurred ---------------------------------- 2
1.         Fruit a group of follicles; Flowers spurred ------------------------------------- 4

2.         Petals none -------------------------------------------------------------------------- 3
2.         Petals present -------------------------------------------------------------- Ranunculus

3.         Sepals usually 4; Involucre none --------------------------------------- Clematis
3.         Sepals usually 5; Involucre present ------------------------------------ Anemone

4.         Flowers regular; Spurs 5 ------------------------------------------------- Aquilegia
4.         Flowers irregular; Spur 1 ------------------------------------------------ Delphinium.

NB:     The number at the right end of a line in the bracketed key indicates the next numbered pair of choices to be considered.

When using keys ensure that:
a)                  The alternating clues are clear and contrasting.
b)                  When measurements are given, do not guess; take the measurements
c)                  Always read both choices
d)                 Be sure you understand the meaning of the terms involved. Do not guess.
e)                  Finally check the conclusion with detailed description of the plant and see if it agrees with the unknown specimen.

In contrasting keys, take note of the following:
a)                  Use constant characteristics rather than variable ones
b)                  Use measurements, not words such as large or small.
c)                  Use characteristics that do not change with season
d)                 If possible start both choices of a pair with the same word and always capitalise the first word.
e)                  Precede the description terms byb the name of the part which they apply e.g.

I.                   “Flowers red or purple “but not “Red or purple flowers”
II.                “Leaves toothed” and not “Toothed leaves” etc.

f)                   Construct a chart of objects to be keyed before constructing the key itself.
g)                  After constructing the key read the description to see if it fits with the unknown specimen.
h)                  Compare the unknown specimen with authenticated specimen in a herbarium.


Other methods of identification include: image comparison (visual comparison of specimen to photographs and illustrations); expert determination (asking an expert who is familiar with the group of plants under study).

BOT 111 ECOLOGICAL SURVEYS

ECOLOGICAL SURVEY FOR TERRESTRIAL HABITATS

Ecological surveys are carried out when studying the vegetation of a given area. They are directed towards the description of the vegetation of a given area. The purpose of such description is to enable people other than the observer to build a mental picture of the area and its vegetation. It also allows the comparison and classification of different plant units.

Before any serious or detailed work is done in the area, it is necessary to know the species present, their distribution and relative degree of abundance of each species. An account of the environmental factors is also important. Therefore the floristic composition expressed as a list of species, life-form composition and structure of vegetation are a necessary basis for all ecological surveys.

The vegetation of an area is studied using several methods and some of the commonly used sampling techniques include the following: quadrat method, transect method, distant method, point method.

1.                  QUADRAT METHOD

The most accurate way to obtain quantitative information about the plants on a particular site is to record every individual on the whole site. This is clearly impractical except for very small areas. Therefore samples are taken, usually by selecting small parts of the site for intensive study. A quadrat is a sample area of defined size and shape and it is assumed that the contents of the quadrat will be representative of the whole site. A quadrat is therefore the smallest or minimum area within which the species of a community are adequately represented.

The minimum area (quadrat size) may be determined by a species-area curve. A species area curve is compiled by placing quadrats of varying sizes on the ground in such a way that each larger quadrat includes all the smaller ones, an arrangement known as nested quadrats. Initially a quadrat of a small size is laid on the ground and all the species occurring in this quadrat are counted. The quadrat size is then increased and newly encountered species are recorded separately. The plot area is increased in this manner and every time the number of new species encountered is listed. A point of diminishing return is eventually reached, beyond which increasing the quadrat size results in the addition of only very few new species.













Quadrat Number                     Species Recorded                               Additional Species
            1.                                             5                                                          -
            2.                                             10                                                        5
            3.                                             17                                                        7
            4.                                             26                                                        9
            5.                                             38                                                        12
            6.                                             51                                                        13
            7.                                             65                                                        14
            8.                                             67                                                        2
            9.                                             69                                                        1
            10.                                           70                                                        1
            11.                                           71                                                        1
            12.                                           71                                                        0


The number of increasing species versus the quadrat area is plotted. From the graph it will be noted that the increase in the number of species is rapid at the initial stages but gradually the rate of increase in the number of new species falls and the curve tends to become horizontal. The point on the curve where the slope becomes horizontal is taken as the minimum area (quadrat size) for sampling the particular vegetation.                                



















The shape of the quadrat is usually square but may be of different shapes – rectangular or circular. The size of quadrat depends upon the type of vegetation to be studied. Quadrats can be made of strings, wood or metal. They can also be made by markings on the ground using pegs and strings; or just a point like in the point quadrat.

Sampling Procedure
In the field the quadrats are either distributed randomly or systematically but the aim should be to cover the entire range of vegetation. The number of sampling quadrats should be so much as to cover 5-10% of the area under study.
Systematic sampling procedure

Quadrats are evenly spaced through out the study area i.e. quadrats are placed at regular intervals. To achieve this pattern, quadrats may be located at uniform intervals along evenly spaced transects throughout the study area. However systematic sampling may lead to biasness and may give a data that is not suitable for statistical analysis.

Random sampling procedure
Strict application of random sampling means that every point within the survey area should have an equal chance of being chosen on each sampling occasion. To take a random sample, a grid of coordinates is set up over the survey area and pairs of random numbers are taken to locate each quadrat. Quadrats can be located randomly by constructing two imaginary axes along the edges of the large area being sampled, dividing the axis into units and picking pairs of units from a table of random numbers. Each quadrat is located using the random numbers as x and y co-ordinates. The bottom left-hand corner of the quadrat is placed where the co-ordinates meet.


Stratified random sampling
Sometimes random quadrats might be clustered in one section of the area. To avoid this, the area can be subdivided into plots and each plot is randomly sampled with fewer quadrats. This sampling procedure is important when environmental parameters vary systematically across the sampled area e.g. upper and lower sections of a slope.

















Random sampling                                                       Stratified random sampling






















Diagram showing the location of a quadrat for random coordinates 0203


Data Collection, Recording and Analysis

In each quadrat the species are identified, the number of individuals per species is recorded and the area covered or occupied by each species in the qaudrat is also recorded. The data obtained above is used to calculate the density, frequency and cover of each species. The relative value of each of the above parameters is also calculated.




























                                    No. and cover of individual species per quadrat
Species
Quadrat Number
1
2
3
Total no. and cover
1.

2.

3.

4.

5.

6.

7.

8.

9.

10.
2 (70%)

4 (10%)

8 (50%)

0

0

0

0

0

0

0

2 (5%)

6 (25%)

0

2 (20%)

1 (5%)

5 (60%)

2 (20%)

0

0

0
0

4 (30%)

5 (40%)

3 (15%)

0

0

10 (25%)

50 (55%)

10 (35%)

9 (20%)
4 (75%)

10 (65%)

13 (90%)

5 (35%)

1 (5%)

5 (60%)

12 (45%)

50 (55%)

10 (35%)

9 (20%)



















Density
Density indicates the numerical strength of a species in an area. It is obtained by counting the number of individuals of each species in the sample area and the dividing it by the total area sampled. (Number of individuals of a species per unit area)


Relative density is the density of one species as a percent of total plant density


Frequency
Refers to the degree of dispersion of individuals of a species in an area and it is usually expressed in terms of percentage occurrence. It is obtained by noting whether a species is present or not in a series of randomly placed quadrats.


Relative frequency is the frequency of one species as a percentage of total plant frequency.


Cover
It is an estimation of the area covered by a given species and it is usually expressed as a percentage of the total area. It may be studied at the canopy level or ground level.


Relative cover is the cover of a species as a percentage of total plant cover (not ground cover).


2.                  TRANSECT METHOD

A transect is a sampling strip (line) extending across a vegetation or habitat and along which observations are made in a systematic or random way. The use of transects is of greater importance where the variation of vegetation in response to a changing environmental factor is well marked. Therefore transects are used to describe the zonation of vegetation in relationship to their environmental factors. There are tw types of transects: line and belt transects.




(a)                Line transect/intercept
A line transect is a single line running across a vegetation or habitat, and is usually a tape measure. Plants touching the line are identified and recorded. The lengths of plant canopies of all the species touching the tape measure are recorded. The total decimal fraction of the line covered by each species multiplied by 100 is equal to its percent cover. Disadvantage of the method is loss of density and frequency measures because there is no area involved. However, if the line is broken up into segments, linear cover, linear density and linear frequency can be obtained.

(b)               Belt transect
It is a transect with a wide breadth. All species between the two lines are identified and recorded. A belt transect can be subdivided into plots and random quadrats are placed in the plots. Density, frequency and cover noted within the quadrats and are calculated as in the quadrat method.




















3.                  POINT QUADRAT

Involves reducing the quadrat into no dimension and it becomes a minute point. Metal pins with sharp tips serve as the points and they are fixed on a metal frame. As the frame is lowered the plants touched by the pins are recorded. The frame is lowered until the ground is reached.










The data obtained is used in the calculation of:



Disadvantage of the method:
  • Density and frequency cannot be used
  • It is limited to low vegetation.

4.                  DISTANT METHODS

The distance between point to plant or plant to plant is measured. There are four distant methods:

(a)    The Nearest individual Method – The distance measured is between random points to nearest plant.
(b)   Nearest Neighbour Method – distance measured is between plant close to random point and its nearest neighbour
(c)    Point Centered Quarter Method (PCQ) – Area around random point is divided into four quarters at 90o. Distance measured is between random point and nearest plant in each quarter.
(d)   Random Pair’s method – A line is drawn between nearest plant and random point. Perpendicular to this line and passing through the random point, an exclusion line is drawn at right angle to the first one. Distance measured is the one between the plant and its nearest neighbour but on the other side of the exclusion line.

 -